It gives me immense pleasure to announce that WikiPathways Client Plugin version 0.2 is now available for download. This version has a new feature (i.e) Upload Pathways from Pathvisio.

Features:

Search Pathways (Basic and Advanced)
Browse Pathways
Upload Pathways (Create and update)

Additional Features:

Open pathway for pathway node that is annotated with pathway identifier
Open pathways which contain similar element as of the selected DataNode
For additional info:

Please Refer:http://plugins.pathvisio.org/wp-client/documentation/

It gives me a immense pleasure to bring into notice that, we have now a feature in WikiPathways Client Plugin which would enable the user to Upload (create/update) Pathways from PathVisio.

Step by step demonstration:

1. Create a Pathway-

  • Select Plugins>>WikiPathways>>Upload>> Create Pathway 

(If their is no Pathway to Upload, the options are disabled)

up1

 

  • Create a Pathway in PathVisio, then click on Create Pathway. A Login Panel appears – Fill the User Credentials.

LOGIN

  • If you don’t  have an account on WikiPathways or you have entered wrong User Credentials.

Loginerror

  • If the User Credentials are valid, then a Description Panel appears, where you have to fill the description to be added to the Pathway.

description

 

  • Now the Pathwasy will be created and uploaded to WikiPathways with Default Curation Tag -‘ Under Construction’.

 

success

2. Upload Pathway

  • Search the Pathway From WikiPathways Client Plugin- to be updated .

 

SEARCHNOW

 

  •  Select Plugins>>WikiPathways>>Update>> UploadPathway  -Description Panel appears

(Login Panel appears if you haven’t logged in)

update

 

 

  • If their are no new revisions available online for the Pathway to be updated, then the Pathway will be updated.

 

update success

Today I’m delighted  to announce that WikiPathways Client Plugin  version 0.1  is now available for download. This version has a lot features.

Features:

  • Search Pathways  (Basic and Advanced)
  • Browse Pathways

Additional Features:

  • Open pathway for pathway node that is annotated with pathway identifier
  • Open pathways which contain similar element as of the selected DataNode

For additional info:

Please Refer:http://plugins.pathvisio.org/wp-client/documentation/

Now we can directly open pathway from WikiPathways on right click of pathway node that is annotated with pathway Identifier.

Considering an example pathways – WP4 ,when we import  it or get it loaded into PathVisio after searching  on Wikpathways through WikipathwaysClient Plugin. We can see that TCA Cycle pathway node is annotated with Pathway Identifier (WP78) and Datasource (‘WikiPathways’).

On Right Click of the “TCA Cycle” (Datanode) an option “Open pathways From Wikipathways”  will exist on choosing it  we get the  Pathway (WP78) loaded into PathVisio.

 

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Implementation Details:

Here,  we  concentrate on the Xref of the pathway node which is annotated with pathway Identifier. If  the Xref Datesource is WikiPathways then we get the ID of the Wikipathways. The ID is nothing but the pathway to be opened with that ID.