List of tutorials


Install the WikiPathways client plugin

Before you start with the tutorials, follow the instructions on how to install the WikiPathways client plugin.


Select Plugins>>Wikipathways>>Search

Keyword Search

red-white-pearl-dot-300x300enter any query text like -Pathway Name: Apoptosis/Pathway element Label:  TGF

red-white-pearl-dot-300x300choose the species(Organism): Homo Sapeins

Pathway Search

red-white-pearl-dot-300x300enter any Pathways Identifier:  WP15 / Pathway Title: Selenium Pathway ‎

red-white-pearl-dot-300x300Press ”ENTER” Key

 Search By Identifier

red-white-pearl-dot-300x300enter any element Identifiers(each in a new line)

eg:      En:ENSG00000012779

           En:ENSG00000005381

red-white-pearl-dot-300x300click  ”Search” Button

 Search By Literature Reference

red-white-pearl-dot-300x300enter any  Pubmed ID: 22096230 / Literature Title: Selenoproteins

red-white-pearl-dot-300x300Press ”ENTER” Key

(link to video)


Browse Pathways:

Select Plugins>>Wikipathways>>Browse

red-white-pearl-dot-300x300choose the species(Organism): Anopheles gambiae

red-white-pearl-dot-300x300choose the Collection:Curated Pathways

red-white-pearl-dot-300x300choose the Curation Tag: unconnected lines

red-white-pearl-dot-300x300click  ”Browse” Button

(link to video)


Upload Pathways:

UploadNew: 

Select Plugins>>Wikipathways>>UploadNew

red-white-pearl-dot-300x300Create a new Pathway then goto “UploadNew” Menu.

red-white-pearl-dot-300x300A Login Dialog appears-Enter the User Credentials

red-white-pearl-dot-300x300click  ”Login” Button

red-white-pearl-dot-300x300A Description Dialog appears-Enter the Description to the Pathway

red-white-pearl-dot-300x300click  ”create” Button

(link to video)

 

Update Pathways

Select Plugins>>Wikipathways>>Update

red-white-pearl-dot-300x300Search and open the pathway which is already created  (through “Search” Menu).

red-white-pearl-dot-300x300Make any modifications then goto “Update” Menu.

red-white-pearl-dot-300x300A Login dialog appears-Enter the User Credentials (If not Logged in earlier)

red-white-pearl-dot-300x300click  ”Login” Button

red-white-pearl-dot-300x300A Description Dialog appears-Enter the Modification description to the Pathway

red-white-pearl-dot-300x300click  ”Update” Button

(link to video)

 


Open pathway diagram for specific pathway node

red-white-pearl-dot-300x300 Open a pathway (WP4) in PathVisio

red-white-pearl-dot-300x300  Right Click on “TCA Cycle” (pathway node)

red-white-pearl-dot-300x300  Click  ”Open Pathways From Wikipathways”

(link to example file)


Find pathways contain specific pathway element

red-white-pearl-dot-300x300 Open a pathway(WP4)  inPathVisio

red-white-pearl-dot-300x300  Right Click on “IsocitricAcid” (DataNode)

red-white-pearl-dot-300x300 Choose a Pathway out of the List of Pathways

(link to example file)

(link to video)